AtPAN( A rabidopsis t haliana P romoter A nalysis N et) is a database for transcription regulatory networks (TRN) construction in Arabidopsis . AtPAN can detect TFBSs and their corresponding transcription factors (TFs) in a promoter or a set of promoters in Arabidopsis. Additionally, the co-expressed TFs and their target genes from microarray expression data could be retrieved from AtPAN. Furthermore, proteins which interact with the co-expressed TFs can then be found, and co-expressed TRN are reconstructed. On the other hand, the relationships between TFs and their target genes obtained from experiments that reported in literatures are also considered in TRN reconstruction in AtPAN.
(AtPAN will be updated according to the increasing number of plant TFs/TFBSs.)
Start to analyze
Start to analyze
Start to analyze
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Department of Life Science and Technology,
Insititute of Tropical Plant Sciences National Cheng Kung University, Tainan, Taiwan
Contact with: Wen-Chi Chang